Setup
Tutorial in writing (1-3)
Datacamp interactive shell lesson ch. 1 (for more practice)
Read: Janssens ch. 1.0-1.5, 2.3.1-2.3.2
Tutorial in writing (3-7)
Datacamp interactive shell lesson ch. 2-5 (for more practice)
Read: Buffalo ch. 3, 7, 12
Read: Janssens ch. 4.0-4.2
Using the cluster: in class instructions
HPC Slides
URI HPC website
Software carpentry HPC tutorial
Slurm cheatsheet
Cloud computing
Read: Buffalo ch. 4
Version control with Git
Read: Buffalo ch. 5
Intro R
Intro to data in R
Read: Modern Dive ch. 2
R Data Viz
Read: Modern Dive ch. 3
539: Read: R 4 Data Science ch. 3
Data Wrangling in R
Read: Modern Dive ch. 4
539: Read: R 4 Data Science ch. 5
Tidy data
Data to tidy
Spread and gather
Read: Modern Dive ch. 5; R 4 Data Science ch. 12
Read: Data organization in spreadsheets
Read: Google Sheets best practices
RMarkdown reports (see links therein)
Read: R 4 Data Science ch. 13, 27
539: Read: R 4 Data Science ch. 29
Functions in R Tutorial
Memory issues in R
Read: R 4 Data Science ch. 21, 19
Data
Notes
Rabbit exercise online
Rabbit exercise to download
Read: A Whirlwind Tour of Python through Control Flow
Read: A Whirlwind Tour of Python (finish); Python Data Science Handbook ch. 1
Complete rabbit exercise
Count words notebook
Count words script
Pandas lesson
Pandas lesson 2
Read: Python Data Science Handbook ch. 3
FYI how to install Plotnine: conda install -c conda-forge plotnine
Python testing tutorial
Read: Effective computation in physics ch. 18